Various carbon dust particles

Nano-sized carbon dusts are suspected of having negative effects on human health. An exact characterization of such particles is necessary to understand possible toxic effects, i.e. in the lung. Observed by transmission electron microscopy (TEM), the carbon dusts are a composite of very small primary particles and larger agglomerates of these. A differentiation of the primary particles and agglomerates according to source is not possible by TEM, however, thermogravimetry investigations in synthetic air atmosphere are helpful. Standardized carbon black and graphite show a single-step oxidation behaviour, whereas ethene soot and diesel soot, for example, show more complex-reaction mechanisms. The results of ethene soot exemplarily demonstrate the oxidation mechanism. In addition to the oxidation reaction to carbon dioxide, a sintering process takes place. To confirm the oxidation mechanism, thermal behaviour of ethene soot has been simulated by kinetic modulation using a three-step reaction mechanism of n-th order. The reaction order indicates a complex mechanism for the first-reaction step. For the second and third-reaction step, a phase boundary mechanism could be suggested.     

Methodological study of extraction procedures applied to urban particulate matter

The modified BCR three-step sequential extraction procedure has been applied to two different samples of urban particulate matters (PM). The distribution of selected trace elements As, Cd, Cr, Mn, Ni, Pb, Zn was investigated and, in a comparative study, the presence of common organic air filters in extraction procedures was evaluated. Analytes in separate fractions were determined by ICP-OES and GFAAS, respectively, depending on concentration levels. While, due to air filters, a significant increase of some analytes mobility in individual fractions has been observed in case of the jet-milled PM (tunnel Letna), but in case of the PKC sample such effect was not found. The analyte impurities built in some filters has been tested, and the impact on the reliability of analyte results has been discussed. The arsenic species occurrence and their stability in presence of air filters (size 47 mm) were investigated in both urban PM samples as well, using HPLC-ICP-MS technique. Water soluble and by three-step BCR procedure extractable arsenic forms are shown in chromatograms     

The Influence of Exocyclic Stereochemistry on the Tethered Aminohydroxylation Reaction

A new strategy that employs an exocyclic stereocenter to effect diastereocontrol in the tethered aminohydroxylation (TA) reaction is applied to the stereoselective synthesis of a range of amino alcohols in good to excellent yields, and with anti selectivities of up to 20:1. The influence of the reaction conditions and substrate parameters on the level of diastereocontrol is described. Furthermore, an “inside alkoxy” model is employed to rationalize the sense and degree of stereoselectivity observed in these systems.     

Photodynamic Activity on Biofilm in Endotracheal Tubes of Patients Admitted to an Intensive Care Unit

Ventilator-associated pneumonia (VAP) is an infection that arises after endotracheal intubation affecting patients under intensive care. The presence of the endotracheal tube (ETT) is a risk factor since it is colonized by multispecies biofilm. Antimicrobial photodynamic therapy (aPDT) could be a strategy to decontaminate ETTs. We verify if methylene blue (MB) associated with external illumination of the ETT could be an alternative to destroy biofilm. We performed an in vitro and ex vivo study. In vitro study was performed with P. aeruginosa biofilm grew over ETT for 7 days. After treatment, the surviving cells were cultured for 3 days and the biofilm was analyzed by crystal violet absorbance. Ex vivo study employed ETT obtained from extubated patients. aPDT was performed with MB (100 µm ) and red LED (λ = 640±20 nm). We quantified the biofilm thickness and used scanning electron microscopy and fluorescence technique to verify morphological and functional changes after aPDT. Our results showed that bacteria remain susceptible to aPDT after sequential treatments. We also attested that aPDT can reduce biofilm thickness, disrupt biofilm attachment from ETT surface and kill microbial cells. These data suggest that aPDT should be investigated to decrease VAP incidence via ETT decontamination.     

Synthesis and Single Crystal Structure Characterization of Dinuclear and Polymeric Mixed-ligand Coordination Compounds of Zinc(II) and Cadmium(II) with the Bridging Ligand 1,2-Bis(pyridin-4-ylmethylene)hydrazine

Three d¹⁰-transition-metal coordination compounds [Cd(tfpb)₂(4-bpmh)]_n ( 1 ), [Cd(9-aca)(NO₃)(OHCH₃)(4-bpmh)]_n ( 2 ) and [Zn₂(dpp)₄(4-bpmh)] ( 3 ) with the bridging ligand 4-bpmh were synthesized [4-bpmh = 1,2-bis(pyridin-4-ylmethylene)hydrazine, tfpb = 4,4,4-trifluoro-1-phenylbutane-1,3-dionate, 9-aca = anthracene-9-carboxylate, dpp = 1,3-diphenylpropane-1,3-dionate]. Compounds 1 – 3 were characterized by FT-IR spectroscopy, elemental analysis, and structurally authenticated by X-ray crystallography. Compounds 1 – 3 are constructed by an O,O'-donor ligand including chelating β-diketonates (tfpb, dpp) in 1 and 3 and a carboxylate ligand (9-aca) in 2 in combination with a linear neutral bidentate and bridging N-ligand (4-bpmh). The assembly and action of the bridging 4-bpmh ligand leads to one-dimensional coordination polymers in 1 , 2 and to a dinuclear coordination complex in 3 . The structures and the solid-state supramolecular interactions for studying the crystal packing fashions of 1 – 3 were analyzed. The supramolecular interactions including hydrogen bonding, C–H ··· π, π ··· π, and C–F ··· π in 1 , 2 , and 3 were founded.     

Taba: A Tool to Analyze the Binding Affinity

Evaluation of ligand-binding affinity using the atomic coordinates of a protein-ligand complex is a challenge from the computational point of view. The availability of crystallographic structures of complexes with binding affinity data opens the possibility to create machine-learning models targeted to a specific protein system. Here, we describe a new methodology that combines a mass-spring system approach with supervised machine-learning techniques to predict the binding affinity of protein-ligand complexes. The combination of these techniques allows exploring the scoring function space, generating a model targeted to a protein system of interest. The new model shows superior predictive performance when compared with classical scoring functions implemented in the programs Molegro Virtual Docker, AutoDock4, and AutoDock Vina. We implemented this methodology in a new program named Taba. Taba is implemented in Python and available to download under the GNU license at https://github.com/azevedolab/taba . © 2019 Wiley Periodicals, Inc.     

Aqueous Diels–Alder reactions for thermochemical storage and heat transfer fluids identified using density functional theory

Thermal storage and transfer fluids have important applications in industrial, transportation, and domestic settings. Current thermal fluids have relatively low specific heats, often significantly below that of water. However, by introducing a thermochemical reaction to a base fluid, it is possible to enhance the fluid's thermal properties. In this work, density functional theory (DFT) is used to screen Diels–Alder reactions for use in aqueous thermal fluids. From an initial set of 52 reactions, four are identified with moderate aqueous solubility and predicted turning temperature near the liquid region of water. These reactions are selectively modified through 60 total functional group substitutions to produce novel reactions with improved solubility and thermal properties. Among the reactions generated by functional group substitution, seven have promising predicted thermal properties, significantly improving specific heat (by as much as 30.5%) and energy storage density (by as much as 4.9%) compared to pure water.     

Competition between Liquid-liquid De-mixing,Crystallization, and Glass Transition in Solutions of PLA of Different Stereochemistry and DEET

Liquid-liquid(L-L)de-mixing and vitrification of solutions of either crystallizable poly(L-lactic acid)(PLLA)or non-crystallizable poly(D/L-lactic acid)(PDLLA)with 50 m%N,N-diethyl-3-methylbenzamide(DEET)were analyzed by calorimetry and cloud-point measurements,which allows drawing conclusions about the effect of polymer stereochemistry on the phase behavior.Regardless of the PLA stereochemistry,vitrification of the solutions on fast cooling,hindering crystallization of PLLA,occurred below-20℃ and suppressed prior L-L de-mixing.The experimental results prove that crystallization in samples containing crystallizable PLLA,observed at around 55℃ on slow cooling,is not preceded by L-L de-mixing.